Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs417629 chr6:5113104 C/T 2.88E-12 173 5.97 27.43 22.38 KM Plot
UCEC rs423272 chr6:105554718 A/G 0.000152 173 19.1 17.2 25.87 KM Plot
UCEC rs4236941 chr8:66480323 C/T 2.05E-5 174 22.57 22.8 17.38 KM Plot
UCEC rs4285702 chr1:10506518 C/T 5.66E-5 171 20.33 20.93 22.7 KM Plot
UCEC rs4352584 chr5:77682948 C/G 5.99E-5 169 21.55 25.3 16.3 KM Plot
UCEC rs4402532 chr15:84783321 A/C 6.15E-11 171 22.67 27.33 7.95 KM Plot
UCEC rs445127 chr6:5112389 C/T 4.46E-6 173 13.47 25.67 22.63 KM Plot
UCEC rs445342 chr6:5110959 G/C 0.000142 174 13.47 24.63 22.57 KM Plot
UCEC rs4529173 chr5:77709430 C/T 2.78E-5 173 21.3 26.07 18.37 KM Plot
UCEC rs45492905 chr18:22017736 C/T 6.04E-12 172 22.6 22.53 2.45 KM Plot
UCEC rs45542932 chr18:22006546 G/A 5.03E-12 173 22.63 22.53 2.45 KM Plot
UCEC rs4595491 chr10:79685833 G/A 0.00015 170 22.9 24.63 14.45 KM Plot
UCEC rs460416 chr6:5137771 C/T 0.000157 174 14.23 24.63 22.38 KM Plot
UCEC rs4620649 chr10:1595302 A/G 3.33E-16 166 6.97 18.67 22.9 KM Plot
UCEC rs4703756 chr5:77683490 T/C 5.99E-5 169 21.55 25.3 16.3 KM Plot